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Update installation documentation

This commit is contained in:
Atsushi Togo 2021-04-20 10:46:28 +09:00
parent 0a617ec912
commit f00b861a6d
1 changed files with 19 additions and 23 deletions
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doc/install.rst
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@ -116,11 +116,12 @@ installed::
% conda install -c conda-forge numpy scipy h5py pyyaml matplotlib
When using hdf5 files from NFS mouted location, the latest h5py may
not work. In this case, installation of an older version is
recommended::
Note that using hdf5 files on NFS mouted file system, you may have to
disable file locking by setting
% conda install hdf5=1.8.18
::
export HDF5_USE_FILE_LOCKING=FALSE
This openblas package contains BLAS, LAPACK, and LAPACKE. When this
``libopenblas`` is linked and the ``else`` statement of the C macro
@ -230,7 +231,11 @@ This installation instruction supposes linux x86-64 environment.
% bash ~/miniconda.sh -b -p $HOME/miniconda
% export PATH="$HOME/miniconda/bin:$PATH"
The detailed installation instruction is found at https://conda.io/projects/conda/en/latest/user-guide/install/index.html.
The detailed installation instruction is found at
https://conda.io/projects/conda/en/latest/user-guide/install/index.html. To
use the conda-forge channel as the default one, ``~/.condarc`` may be
written following the conda-forge official documentation
(https://conda-forge.org/docs/user/tipsandtricks.html).
2. Initialization of conda and setup of conda environment
@ -248,36 +253,27 @@ This installation instruction supposes linux x86-64 environment.
::
% conda create -n phono3py -c conda-forge python=3.7
% conda create -n phono3py -c conda-forge python=3.8
% conda activate phono3py
Use of this is strongly recommended, otherwise proper settings of
``CONDA_PREFIX``, ``C_INCLUDE_PATH``, and ``LD_LIBRARY_PATH`` will
be necessary.
2. Installation of compiler from conda
For usual 64-bit Linux system::
% conda install -c conda-forge gcc_linux-64
For macOS::
% conda install clang_osx-64 llvm-openmp
3. Install necessary conda packages for phono3py
2. Install necessary conda packages for phono3py
::
% conda install -c conda-forge numpy scipy h5py pyyaml matplotlib openblas libgfortran
% conda install -c conda-forge numpy scipy h5py pyyaml matplotlib-base compilers "libblas=*=*mkl" spglib mkl-include
When using hdf5 files from NFS mouted location, the latest h5py may
not work. In this case, installation of an older version is
recommended::
Note that using hdf5 files on NFS mouted file system, you may have to
disable file locking by setting
% conda install -c conda-forge hdf5=1.8.18
::
Install the latest phonopy and phono3py::
export HDF5_USE_FILE_LOCKING=FALSE
Install the latest phonopy and phono3py from github sources::
% mkdir dev
% cd dev