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<div id="jb-print-docs-body" class="onlyprint">
    <h1>How to write phono3py documentation</h1>
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                <h2> Contents </h2>
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<li class="toc-h2 nav-item toc-entry"><a class="reference internal nav-link" href="#how-to-compile">How to compile</a></li>
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  <section class="tex2jax_ignore mathjax_ignore" id="how-to-write-phono3py-documentation">
<h1>How to write phono3py documentation<a class="headerlink" href="#how-to-write-phono3py-documentation" title="Link to this heading">#</a></h1>
<p>This directory contains python-sphinx documentation source.</p>
<section id="how-to-compile">
<h2>How to compile<a class="headerlink" href="#how-to-compile" title="Link to this heading">#</a></h2>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>make<span class="w"> </span>html
</pre></div>
</div>
</section>
<section id="source-files">
<h2>Source files<a class="headerlink" href="#source-files" title="Link to this heading">#</a></h2>
<ul class="simple">
<li><p><code class="docutils literal notranslate"><span class="pre">conf.py</span></code> contains the sphinx setting configuration.</p></li>
<li><p><code class="docutils literal notranslate"><span class="pre">*.rst</span></code> are the usual sphinx documentation source and the filenames without <code class="docutils literal notranslate"><span class="pre">.rst</span></code> are the keys to link from toctree mainly in <code class="docutils literal notranslate"><span class="pre">index.rst</span></code>.</p></li>
</ul>
</section>
<section id="how-to-publish">
<h2>How to publish<a class="headerlink" href="#how-to-publish" title="Link to this heading">#</a></h2>
<p>Web page files are copied to <code class="docutils literal notranslate"><span class="pre">gh-pages</span></code> branch. At the phono3py github top directory,</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git<span class="w"> </span>checkout<span class="w"> </span>gh-pages
rm<span class="w"> </span>-r<span class="w"> </span>.buildinfo<span class="w"> </span>.doctrees<span class="w"> </span>*
</pre></div>
</div>
<p>From the directory the sphinx doc is complied,</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>rsync<span class="w"> </span>-avh<span class="w"> </span>_build/<span class="w"> </span>&lt;phono3py-repository-directory&gt;/
</pre></div>
</div>
<p>Again, at the phono3py github top directory,</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>git<span class="w"> </span>add<span class="w"> </span>.
git<span class="w"> </span>commit<span class="w"> </span>-a<span class="w"> </span>-m<span class="w"> </span><span class="s2">&quot;Update documentation ...&quot;</span>
git<span class="w"> </span>push
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